# Will Styler
# Markdown to LaTeX Dissertation Build Script

# Captures the date for later use
date=`date +"%m-%d-%y-%H%M"`

# Move into the build folder
cd ~/Documents/dissertation/0_build/

# Copy the scripts used to generate my models into the folder, for safe keeping
cp ~/Documents/dissertation/4_correlations_and_ML/_run_ml.py .
cp ~/Documents/dissertation/4_correlations_and_ML/_run_analyses.py . 
cp ~/Documents/dissertation/5_englishperc/_diss_perc_analysis.r . 

# Gather the files which together constitute a dissertation into one place.
cat ~/Documents/dissertation/will_dissertation.md > disbuild.md

# These two are actually TeX files, but I call them .md so I can edit them on an iPad
cat ~/Documents/dissertation/will_diss_abstract.md > will_diss_abstract.tex
cat ~/Documents/dissertation/will_diss_acknowledgements.md > will_diss_acknowledgements.tex

# Run Pandoc to turn the markdown file with the bulk of the document into a .TeX file
/usr/local/bin/pandoc -f markdown --latex-engine=xelatex -R -i disbuild.md -o pandocked.tex

# Remove some of the junk that Markdown adds when converting to TeX.
sed -i .bak 's/\[<+->\]//g' ~/Documents/dissertation/0_build/pandocked.tex
sed -i .bak 's/\\def\\labelenumi{\\arabic{enumi}.}//g' ~/Documents/dissertation/0_build/pandocked.tex
sed -i .bak 's/\\itemsep1pt\\parskip0pt\\parsep0pt//g' ~/Documents/dissertation/0_build/pandocked.tex

# This turns the word "F0" into a pretty version, with a subscript.
perl -pi -w -e 's/F0/F\$_{0}\$/g;' ~/Documents/dissertation/0_build/pandocked.tex

# Concatenate the header file (with the preambles, TOC, etc), the pandoc-created TeX file, and the footer file (with the bibliography) into a single buildable TeX file
cat ~/Documents/dissertation/0_build/header.tex ~/Documents/dissertation/0_build/pandocked.tex ~/Documents/dissertation/0_build/footer.tex > ~/Documents/dissertation/0_build/Stylerdissertation.tex

# Build the TeX once without stopping for errors (as the hyperref plugin throws errors on the first run)
/usr/texbin/xelatex -output-driver="/usr/texbin/xdvipdfmx" -interaction=nonstopmode -synctex=1 Stylerdissertation

# Render the bibliography based on the prior file
/usr/texbin/bibtex Stylerdissertation

# Render the file twice more, to ensure that the bibliographical references are included and that the TOC reflects everything accurately
/usr/texbin/xelatex -output-driver="/usr/texbin/xdvipdfmx" -synctex=1 Stylerdissertation
/usr/texbin/xelatex -output-driver="/usr/texbin/xdvipdfmx" -synctex=1  Stylerdissertation

# Open the PDF generated in my PDF reader of choice
open /Applications/Skim.app ~/Documents/dissertation/0_build/Stylerdissertation.pdf

# Copy the PDF and final TeX out of the build folder for accessibility
cp Stylerdissertation.pdf ~/Documents/dissertation/styler_dis_draft.pdf
cp Stylerdissertation.pdf ~/Documents/to_read/latest_diss.pdf

# Archives a copy of the md and tex files by date, leaving a trail of prior drafts
tar cfvz ~/Documents/dissertation/0_build/latest.tar.gz disbuild.md Stylerdissertation.tex _run_analyses.py _run_ml.py _diss_perc_analysis.r

# Rename the archived version, including the date generated.
mv ~/Documents/dissertation/0_build/latest.tar.gz ~/Documents/dissertation/0_build/backups/diss_bu_$date.tar.gz